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  1. Budd, Graham E. (Ed.)

    Sponge-grade Archaeocyatha were early Cambrian biomineralizing metazoans that constructed reefs globally. Despite decades of research, many facets of archaeocyath palaeobiology remain unclear, making it difficult to reconstruct the palaeoecology of Cambrian reef ecosystems. Of specific interest is how these organisms fed; previous experimental studies have suggested that archaeocyaths functioned as passive suspension feeders relying on ambient currents to transport nutrient-rich water into their central cavities. Here, we test this hypothesis using computational fluid dynamics (CFD) simulations of digital models of select archaeocyath species. Our results demonstrate that, given a range of plausible current velocities, there was very little fluid circulation through the skeleton, suggesting obligate passive suspension feeding was unlikely. Comparing our simulation data with exhalent velocities collected from extant sponges, we infer an active suspension feeding lifestyle for archaeocyaths. The combination of active suspension feeding and biomineralization in Archaeocyatha may have facilitated the creation of modern metazoan reef ecosystems.

     
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    Free, publicly-accessible full text available November 1, 2024
  2. The stem-group euarthropodAnomalocaris canadensisis one of the largest Cambrian animals and is often considered the quintessential apex predator of its time. This radiodont is commonly interpreted as a demersal hunter, responsible for inflicting injuries seen in benthic trilobites. However, controversy surrounds the ability ofA. canadensisto use its spinose frontal appendages to masticate or even manipulate biomineralized prey. Here, we apply a new integrative computational approach, combining three-dimensional digital modelling, kinematics, finite-element analysis (FEA) and computational fluid dynamics (CFD) to rigorously analyse anA. canadensisfeeding appendage and test its morphofunctional limits. These models corroborate a raptorial function, but expose inconsistencies with a capacity for durophagy. In particular, FEA results show that certain parts of the appendage would have experienced high degrees of plastic deformation, especially at the endites, the points of impact with prey. The CFD results demonstrate that outstretched appendages produced low drag and hence represented the optimal orientation for speed, permitting acceleration bursts to capture prey. These data, when combined with evidence regarding the functional morphology of its oral cone, eyes, body flaps and tail fan, suggest thatA. canadensiswas an agile nektonic predator that fed on soft-bodied animals swimming in a well-lit water column above the benthos. The lifestyle ofA. canadensisand that of other radiodonts, including plausible durophages, suggests that niche partitioning across this clade influenced the dynamics of Cambrian food webs, impacting on a diverse array of organisms at different sizes, tiers and trophic levels.

     
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    Free, publicly-accessible full text available July 12, 2024
  3. The low cost and rapid provisioning capabilities have made the cloud a desirable platform to launch complex scientific applications. However, resource utilization optimization is a significant challenge for cloud service providers, since the earlier focus is provided on optimizing resources for the applications that run on the cloud, with a low emphasis being provided on optimizing resource utilization of the cloud computing internal processes. Code refactoring has been associated with improving the maintenance and understanding of software code. However, analyzing the impact of the refactoring source code of the cloud and studying its impact on cloud resource usage require further analysis. In this paper, we propose a framework called Unified Regression Modeling (URegM) which predicts the impact of code smell refactor- ing on cloud resource usage. We test our experiments in a real-life cloud environment using a complex scientific application as a workload. Results show that URegM is capable of accurately predicting resource consumption due to code smell refactoring. This will permit cloud service providers with advanced knowledge about the impact of refactoring code smells on resource consumption, thus allowing them to plan their resource provisioning and code refactoring more effectively. 
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  4. Software design debt aims to elucidate the rectification attempts of the present design flaws and studies the influence of those to the cost and time of the software. Design smells are a key cause of incurring design debt. Although the impact of design smells on design debt have been predominantly considered in current literature, how design smells are caused due to not following software engineering best practices require more exploration. This research provides a tool which is used for design smell detection in Java software by analyzing large volume of source codes. More specifically, 409,539 Lines of Code (LoC) and 17,760 class files of open source Java software are analyzed here. Obtained results show desirable precision values ranging from 81.01% to 93.43%. Based on the output of the tool, a study is conducted to relate the cause of the detected design smells to two software engineering challenges namely "irregular team meetings" and "scope creep". As a result, the gained information will provide insight to the software engineers to take necessary steps of design remediation actions. 
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  5. Nanhsiungchelyidae are a group of large turtles that lived in Asia and North America during the Cretaceous. Here we report a new species of nanhsiungchelyid,Nanhsiungchelys yangisp. nov., from the Upper Cretaceous of Nanxiong Basin, China. The specimen consists of a well-preserved skull and lower jaw, as well as the anterior parts of the carapace and plastron. The diagnostic features ofNanhsiungchelysinclude a large entire carapace length (∼55.5 cm), a network of sculptures consisting of pits and ridges on the surface of the skull and shell, shallow cheek emargination and temporal emargination, deep nuchal emargination, and a pair of anterolateral processes on the carapace. However,Nanhsiungchelys yangidiffers from the other species ofNanhsiungchelysmainly in having a triangular-shaped snout (in dorsal view) and wide anterolateral processes on the carapace. Additionally, some other characteristics (e.g., the premaxilla is higher than wide, the maxilla is unseen in dorsal views, a small portion of the maxilla extends posterior and ventral of the orbit, and the parietal is bigger than the frontal) are strong evidence to distinguishNanhsiungchelys yangifromNanhsiungchelys wuchingensis. A phylogenetic analysis of nanhsiungchelyids placesNanhsiungchelys yangiandNanhsiungchelys wuchingensisas sister taxa.Nanhsiungchelys yangiand some other nanhsiungchelyids bear distinct anterolateral processes on the carapace, which have not been reported in any extant turtles and may have played a role in protecting the head. The Nanxiong Basin was extremely hot during the Late Cretaceous, and so we suggest that nanhsiungchelyids might have immersed themselves in mud or water to avoid the heat, similar to some extant tortoises. If they were capable of swimming, our computer simulations of fluid flow suggest the anterolateral processes could have reduced drag during locomotion.

     
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  6. Pteridinium simplex is an iconic erniettomorph taxon best known from late Ediacaran successions in South Australia, Russia, and Namibia. Despite nearly 100 years of study, there remain fundamental questions surrounding the paleobiology and paleoecology of this organism, including its life position relative to the sediment–water interface, and how it fed and functioned within benthic communities. Here, we combine a redescription of specimens housed at the Senckenberg Forschungsinstitut und Naturmuseum Frankfurt with field observations of fossiliferous surfaces, to constrain the life habit of Pteridinium and gain insights into the character of benthic ecosystems shortly before the beginning of the Cambrian. We present paleontological and sedimentological evidence suggesting that Pteridinium was semi-infaunal and lived gregariously in aggregated communities, preferentially adopting an orientation with the long axis perpendicular to the prevailing current direction. Using computational fluid dynamics simulations, we demonstrate that this life habit could plausibly have led to suspended food particles settling within the organism's central cavity. This supports interpretation of Pteridinium as a macroscopic suspension feeder that functioned similarly to the coeval erniettomorph Ernietta, emblematic of a broader paleoecological shift toward benthic suspension-feeding strategies over the course of the latest Ediacaran. Finally, we discuss how this new reconstruction of Pteridinium provides information concerning its potential relationships with extant animal groups and state a case for reconstructing Pteridinium as a colonial metazoan. 
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  7. null (Ed.)
    Rapidly growing societal needs in urban areas are increasing the demand for tall buildings with complex structural systems. Many of these buildings are located in areas characterized by high seismicity. Quantifying the seismic resilience of these buildings requires comprehensive fragility assessment that integrates iterative nonlinear dynamic analysis (NDA). Under these circumstances, traditional finite element (FE) analysis may become impractical due to its high computational cost. Soft-computing methods can be applied in the domain of NDA to reduce the computational cost of seismic fragility analysis. This study presents a framework that employs nonlinear autoregressive neural networks with exogenous input (NARX) in fragility analysis of multi-story buildings. The framework uses structural health monitoring data to calibrate a nonlinear FE model. The model is employed to generate the training dataset for NARX neural networks with ground acceleration and displacement time histories as the input and output of the network, respectively. The trained NARX networks are then used to perform incremental dynamic analysis (IDA) for a suite of ground motions. Fragility analysis is next conducted based on the results of the IDA obtained from the trained NARX network. The framework is illustrated on a twelve-story reinforced concrete building located at Oklahoma State University, Stillwater campus. 
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  8. Free, publicly-accessible full text available July 1, 2024